HL_7PJZ_057

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGAAUGGAAGG

Length

12 nucleotides

Bulged bases

7PJZ|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJZ_057 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3395

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7PJZ|1|A|C|2403
7PJZ|1|A|U|2404
7PJZ|1|A|G|2405
7PJZ|1|A|A|2406
7PJZ|1|A|A|2407
7PJZ|1|A|U|2408
7PJZ|1|A|G|2409
7PJZ|1|A|G|2410
7PJZ|1|A|A|2411
7PJZ|1|A|A|2412
7PJZ|1|A|G|2413
7PJZ|1|A|G|2414

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15