HL_7PNY_011

3D structure

PDB id

7PNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GA(5MU)UAGAUACC

Length

11 nucleotides

Bulged bases

7PNY|1|A|U|1081

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PNY_011 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0934

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7PNY|1|A|G|1074
7PNY|1|A|A|1075
7PNY|1|A|5MU|1076
7PNY|1|A|U|1077
7PNY|1|A|A|1078
7PNY|1|A|G|1079
7PNY|1|A|A|1080
7PNY|1|A|U|1081
7PNY|1|A|A|1082
7PNY|1|A|C|1083
7PNY|1|A|C|1084

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase