HL_7PO0_011

3D structure

PDB id

7PO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(5MU)UAGAUACC

Length

11 nucleotides

Bulged bases

7PO0|1|A|U|1081

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO0_011 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0889

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7PO0|1|A|G|1074
7PO0|1|A|A|1075
7PO0|1|A|5MU|1076
7PO0|1|A|U|1077
7PO0|1|A|A|1078
7PO0|1|A|G|1079
7PO0|1|A|A|1080
7PO0|1|A|U|1081
7PO0|1|A|A|1082
7PO0|1|A|C|1083
7PO0|1|A|C|1084

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 8

Mitochondrial translational initiation factor 3, isoform CRA_a

Chain I

28S ribosomal protein S11, mitochondrial