HL_7PO4_014

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO4_014 not in the Motif Atlas

Geometric match to HL_6PRV_002

Geometric discrepancy: 0.2031

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7PO4|1|A|C|2202
7PO4|1|A|G|2203
7PO4|1|A|U|2204
7PO4|1|A|U|2205
7PO4|1|A|C|2206
7PO4|1|A|A|2207
7PO4|1|A|A|2208
7PO4|1|A|G|2209

Current chains

Chain A

16SrRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial