HL_7PWG_019

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

ACGCGCAGAU

Length

10 nucleotides

Bulged bases

7PWG|1|1|C|595, 7PWG|1|1|G|599, 7PWG|1|1|A|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_019 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0958

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7PWG|1|1|A|592
7PWG|1|1|C|593
7PWG|1|1|G|594
7PWG|1|1|C|595
7PWG|1|1|G|596
7PWG|1|1|C|597
7PWG|1|1|A|598
7PWG|1|1|G|599
7PWG|1|1|A|600
7PWG|1|1|U|601

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Ribosomal protein L17

Chain j

Ribosomal protein L37