HL_7PWG_022

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUGGCCUG

Length

8 nucleotides

Bulged bases

7PWG|1|1|C|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_022 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.2212

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PWG|1|1|C|787
7PWG|1|1|U|788
7PWG|1|1|G|789
7PWG|1|1|G|790
7PWG|1|1|C|791
7PWG|1|1|C|792
7PWG|1|1|U|793
7PWG|1|1|G|794

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain D

Ribosomal protein L5

Chain T

Ribosomal protein L21

Chain b

60S ribosomal protein L29