HL_7PWG_041

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUUACUAGAAA

Length

11 nucleotides

Bulged bases

7PWG|1|1|A|1626, 7PWG|1|1|C|1627, 7PWG|1|1|U|1628, 7PWG|1|1|A|1632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_041 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.152

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7PWG|1|1|U|1623
7PWG|1|1|U|1624
7PWG|1|1|U|1625
7PWG|1|1|A|1626
7PWG|1|1|C|1627
7PWG|1|1|U|1628
7PWG|1|1|A|1629
7PWG|1|1|G|1630
7PWG|1|1|A|1631
7PWG|1|1|A|1632
7PWG|1|1|A|1633

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2

Chain j

Ribosomal protein L37