HL_7PWO_004

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

7PWO|1|1|G|120, 7PWO|1|1|G|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_004 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1584

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7PWO|1|1|G|119
7PWO|1|1|G|120
7PWO|1|1|C|121
7PWO|1|1|G|122
7PWO|1|1|C|123

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 42

rRNA 5.8S

Chain G2

60S ribosomal protein L7a

Chain N2

Ribosomal protein L15

Chain h2

Ribosomal protein L35