HL_7PWO_006

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

7PWO|1|1|G|176, 7PWO|1|1|A|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1489

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PWO|1|1|C|174
7PWO|1|1|C|175
7PWO|1|1|G|176
7PWO|1|1|A|177
7PWO|1|1|G|178

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C2

Ribosomal protein L4

Chain Y2

Ribosomal protein L26