HL_7PWO_007

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUGCAAGCC

Length

9 nucleotides

Bulged bases

7PWO|1|1|G|184, 7PWO|1|1|C|185, 7PWO|1|1|A|186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1228

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7PWO|1|1|G|182
7PWO|1|1|U|183
7PWO|1|1|G|184
7PWO|1|1|C|185
7PWO|1|1|A|186
7PWO|1|1|A|187
7PWO|1|1|G|188
7PWO|1|1|C|189
7PWO|1|1|C|190

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 42

rRNA 5.8S

Chain C2

Ribosomal protein L4

Chain Y2

Ribosomal protein L26