HL_7PWO_016

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCCCCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_016 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2763

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7PWO|1|1|C|461
7PWO|1|1|G|462
7PWO|1|1|C|463
7PWO|1|1|C|464
7PWO|1|1|C|465
7PWO|1|1|C|466
7PWO|1|1|G|467
7PWO|1|1|G|468

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain Q2

Ribosomal protein L18

Chain b2

60S ribosomal protein L29