HL_7PWO_020

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7PWO|1|1|A|629, 7PWO|1|1|G|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_020 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1034

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7PWO|1|1|G|626
7PWO|1|1|C|627
7PWO|1|1|G|628
7PWO|1|1|A|629
7PWO|1|1|A|630
7PWO|1|1|A|631
7PWO|1|1|G|632
7PWO|1|1|A|633
7PWO|1|1|C|634

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A2

Ribosomal protein L2

Chain N2

Ribosomal protein L15

Chain j2

Ribosomal protein L37