HL_7PWO_028

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUGCAUCUG

Length

9 nucleotides

Bulged bases

7PWO|1|1|G|1190, 7PWO|1|1|C|1194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_028 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.304

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7PWO|1|1|C|1188
7PWO|1|1|U|1189
7PWO|1|1|G|1190
7PWO|1|1|C|1191
7PWO|1|1|A|1192
7PWO|1|1|U|1193
7PWO|1|1|C|1194
7PWO|1|1|U|1195
7PWO|1|1|G|1196

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain P2

Ribosomal protein L17

Chain R2

Ribosomal protein L19

Chain l2

Ribosomal protein L39