HL_7PWO_039

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_039 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1967

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7PWO|1|1|C|1578
7PWO|1|1|G|1579
7PWO|1|1|G|1587
7PWO|1|1|G|1588
7PWO|1|1|G|1589

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L1

SSU ribosomal protein S17P

Chain R2

Ribosomal protein L19