HL_7PWO_056

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCCCGCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_056 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1276

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7PWO|1|1|C|2262
7PWO|1|1|G|2263
7PWO|1|1|C|2264
7PWO|1|1|C|2265
7PWO|1|1|C|2266
7PWO|1|1|G|2267
7PWO|1|1|C|2268
7PWO|1|1|A|2269
7PWO|1|1|G|2270

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain I2

Ribosomal protein L10

Chain m2

Ubiquitin/Ribosomal protein L40e