HL_7PWO_057

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCACCGG

Length

8 nucleotides

Bulged bases

7PWO|1|1|G|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_057 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0852

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7PWO|1|1|C|2319
7PWO|1|1|G|2320
7PWO|1|1|C|2321
7PWO|1|1|A|2322
7PWO|1|1|C|2323
7PWO|1|1|C|2324
7PWO|1|1|G|2325
7PWO|1|1|G|2326

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain H2

Ribosomal protein L6

Chain m2

Ubiquitin/Ribosomal protein L40e