HL_7PWO_066

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAGGACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_066 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.2569

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7PWO|1|2|C|63
7PWO|1|2|A|64
7PWO|1|2|G|69
7PWO|1|2|G|70
7PWO|1|2|A|71
7PWO|1|2|C|72
7PWO|1|2|G|73

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain G1

40S ribosomal protein S6