HL_7PWO_068

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGCGAGC

Length

7 nucleotides

Bulged bases

7PWO|1|2|G|186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_068 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1314

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PWO|1|2|G|181
7PWO|1|2|G|182
7PWO|1|2|C|183
7PWO|1|2|G|184
7PWO|1|2|A|185
7PWO|1|2|G|186
7PWO|1|2|C|187

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain G1

40S ribosomal protein S6

Chain L1

SSU ribosomal protein S17P