HL_7PWO_071

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUGCGAGACGG

Length

12 nucleotides

Bulged bases

7PWO|1|2|C|314, 7PWO|1|2|G|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_071 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1177

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|C|305
7PWO|1|2|C|306
7PWO|1|2|U|307
7PWO|1|2|G|308
7PWO|1|2|C|309
7PWO|1|2|G|310
7PWO|1|2|A|311
7PWO|1|2|G|312
7PWO|1|2|A|313
7PWO|1|2|C|314
7PWO|1|2|G|315
7PWO|1|2|G|316

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain E1

40S ribosomal protein S4

Chain G1

40S ribosomal protein S6

Chain I1

40S ribosomal protein S8