HL_7PWO_074

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGGGCCCACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_074 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.3493

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7PWO|1|2|G|400
7PWO|1|2|C|401
7PWO|1|2|G|402
7PWO|1|2|G|403
7PWO|1|2|G|404
7PWO|1|2|C|405
7PWO|1|2|C|406
7PWO|1|2|C|407
7PWO|1|2|A|408
7PWO|1|2|C|409
7PWO|1|2|C|410

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain J1

Ribosomal protein S9

Chain Y1

Ribosomal protein S24