HL_7PWO_080

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAUCAGACACC

Length

11 nucleotides

Bulged bases

7PWO|1|2|C|756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_080 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1069

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7PWO|1|2|G|749
7PWO|1|2|A|750
7PWO|1|2|U|751
7PWO|1|2|C|752
7PWO|1|2|A|753
7PWO|1|2|G|754
7PWO|1|2|A|755
7PWO|1|2|C|756
7PWO|1|2|A|757
7PWO|1|2|C|758
7PWO|1|2|C|759

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain O1

Ribosomal protein S14