HL_7PWO_084

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAC(C4J)CAACGC

Length

10 nucleotides

Bulged bases

7PWO|1|2|G|938

QA status

Modified nucleotides: C4J

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_084 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.1298

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|G|930
7PWO|1|2|A|931
7PWO|1|2|C|932
7PWO|1|2|C4J|933
7PWO|1|2|C|934
7PWO|1|2|A|935
7PWO|1|2|A|936
7PWO|1|2|C|937
7PWO|1|2|G|938
7PWO|1|2|C|939

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain Q1

Ribosomal protein S16

Chain U1

Ribosomal protein S20