HL_7PWO_089

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_089 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1881

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWO|1|2|C|1197
7PWO|1|2|G|1198
7PWO|1|2|C|1199
7PWO|1|2|G|1200
7PWO|1|2|A|1201
7PWO|1|2|G|1202

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain S1

Ribosomal protein S18

Chain T1

Ribosomal protein S19e