HL_7PWO_090

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

7PWO|1|2|C|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_090 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1779

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7PWO|1|2|C|1239
7PWO|1|2|U|1240
7PWO|1|2|G|1241
7PWO|1|2|G|1242
7PWO|1|2|A|1243
7PWO|1|2|A|1244
7PWO|1|2|C|1245
7PWO|1|2|G|1246

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain S1

Ribosomal protein S18

Chain d1

Ribosomal protein S29A