HL_7PWO_093

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

7PWO|1|2|G|1433

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_093 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.0789

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWO|1|2|G|1431
7PWO|1|2|U|1432
7PWO|1|2|G|1433
7PWO|1|2|MA6|1434
7PWO|1|2|MA6|1435
7PWO|1|2|C|1436

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain n1

Ribosomal protein eL41