HL_7PWO_096
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGGCGGAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PWO_096 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.2218
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
7PWO|1|42|C|48
7PWO|1|42|G|49
7PWO|1|42|G|50
7PWO|1|42|C|51
7PWO|1|42|G|52
7PWO|1|42|G|53
7PWO|1|42|A|54
7PWO|1|42|G|55
7PWO|1|42|C|56
7PWO|1|42|G|57
Current chains
- Chain 42
- rRNA 5.8S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X2
- Ribosomal protein L23A
- Chain h2
- Ribosomal protein L35
- Chain j2
- Ribosomal protein L37
- Chain l2
- Ribosomal protein L39
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