HL_7PWO_099

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_099 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.2165

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

7PWO|1|42|C|115
7PWO|1|42|C|116
7PWO|1|42|C|118
7PWO|1|42|G|119
7PWO|1|42|G|120

Current chains

Chain 42

rRNA 5.8S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X2

Ribosomal protein L23A