HL_7PWO_100

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCGA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWO_100 not in the Motif Atlas

Homologous match to HL_8P9A_122

Geometric discrepancy: 0.1418

The information below is about HL_8P9A_122

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7PWO|1|1|C|308
7PWO|1|1|G|309
7PWO|1|1|C|310
7PWO|1|1|G|311
7PWO|1|1|A|312
7PWO|1|1|OMG|313

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C2

Ribosomal protein L4

Chain j2

Ribosomal protein L37

Chain l2

Ribosomal protein L39