HL_7PWO_101
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UCUCGA(A2M)AC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 7PWO|1|1|C|395
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PWO_101 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.1256
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7PWO|1|1|U|387
7PWO|1|1|C|388
7PWO|1|1|U|389
7PWO|1|1|C|390
7PWO|1|1|G|391
7PWO|1|1|A|392
7PWO|1|1|A2M|393
7PWO|1|1|A|394
7PWO|1|1|C|395
7PWO|1|1|A2M|396
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain B2
- Ribosomal protein L3
- Chain a2
- Ribosomal protein L27a
- Chain b2
- 60S ribosomal protein L29
- Chain e2
- Ribosomal protein L32
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