HL_7PZY_051

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7PZY|1|1|U|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_051 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0607

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7PZY|1|1|U|2270
7PZY|1|1|C|2271
7PZY|1|1|U|2272
7PZY|1|1|A|2273
7PZY|1|1|A|2274
7PZY|1|1|U|2275
7PZY|1|1|U|2276
7PZY|1|1|A|2277
7PZY|1|1|G|2278

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain A

Small subunit ribosomal RNA; SSU rRNA