HL_7PZY_086

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7PZY|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_086 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.0529

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7PZY|1|A|G|328
7PZY|1|A|A|329
7PZY|1|A|U|330
7PZY|1|A|A|331
7PZY|1|A|G|332
7PZY|1|A|U|333
7PZY|1|A|G|334
7PZY|1|A|G|335
7PZY|1|A|C|336

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

Ribosomal 40S subunit protein S11A