HL_7PZY_107

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7PZY|1|A|U|1299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_107 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1262

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7PZY|1|A|C|1294
7PZY|1|A|U|1295
7PZY|1|A|U|1296
7PZY|1|A|A|1297
7PZY|1|A|A|1298
7PZY|1|A|U|1299
7PZY|1|A|U|1300
7PZY|1|A|G|1301

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal 40S subunit protein S17B