HL_7Q08_008

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

7Q08|1|1|A|284, 7Q08|1|1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.0631

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7Q08|1|1|U|278
7Q08|1|1|U|279
7Q08|1|1|U|280
7Q08|1|1|G|281
7Q08|1|1|G|282
7Q08|1|1|G|283
7Q08|1|1|A|284
7Q08|1|1|A|285
7Q08|1|1|U|286
7Q08|1|1|G|287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

Ribosomal 60S subunit protein L28

Chain AP

Ribosomal 60S subunit protein L42A

Chain t

60S ribosomal protein L13

Chain v

Ribosomal protein L15