3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7Q08_020 not in the Motif Atlas
Homologous match to HL_8C3A_019
Geometric discrepancy: 0.1162
The information below is about HL_8C3A_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7Q08|1|1|G|840
7Q08|1|1|G|841
7Q08|1|1|A|842
7Q08|1|1|A|843
7Q08|1|1|A|844
7Q08|1|1|C|845

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain AQ
Ribosomal 60S subunit protein L43A
Chain M
Ribosomal 40S subunit protein S11A
Chain O
Ribosomal 40S subunit protein S13

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