HL_7Q08_023

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7Q08|1|1|C|955, 7Q08|1|1|A|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1224

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7Q08|1|1|C|954
7Q08|1|1|C|955
7Q08|1|1|U|956
7Q08|1|1|C|957
7Q08|1|1|A|958
7Q08|1|1|G|959

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

Ribosomal 60S subunit protein L28

Chain AC

60S ribosomal protein L29

Chain AP

Ribosomal 60S subunit protein L42A