HL_7Q08_033

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7Q08|1|1|G|1503, 7Q08|1|1|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_033 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0667

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7Q08|1|1|A|1502
7Q08|1|1|G|1503
7Q08|1|1|C|1504
7Q08|1|1|A|1505
7Q08|1|1|G|1506
7Q08|1|1|U|1507
7Q08|1|1|U|1508

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain x

Ribosomal 60S subunit protein L17B

Chain z

Ribosomal protein L19