HL_7Q08_035

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAUUUUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_035 not in the Motif Atlas

Homologous match to HL_8C3A_034

Geometric discrepancy: 0.2147

The information below is about HL_8C3A_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41725.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7Q08|1|1|G|1562
7Q08|1|1|A|1563
7Q08|1|1|U|1564
7Q08|1|1|U|1565
7Q08|1|1|U|1566
7Q08|1|1|U|1567
7Q08|1|1|U|1568
7Q08|1|1|C|1569

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

Ribosomal 60S subunit protein L25