3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
UUCAGUGUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7Q08_060 not in the Motif Atlas
Homologous match to HL_8C3A_059
Geometric discrepancy: 0.0612
The information below is about HL_8C3A_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34636.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7Q08|1|1|U|2696
7Q08|1|1|U|2697
7Q08|1|1|C|2698
7Q08|1|1|A|2699
7Q08|1|1|G|2700
7Q08|1|1|U|2701
7Q08|1|1|G|2702
7Q08|1|1|U|2703
7Q08|1|1|G|2704

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 2
Ribosomal 60S subunit protein L21A
Chain AB
Ribosomal 60S subunit protein L28
Chain AP
Ribosomal 60S subunit protein L42A
Chain y
Ribosomal 60S subunit protein L18A

Coloring options:


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