HL_7Q08_097

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_097 not in the Motif Atlas

Geometric match to HL_5J7L_015

Geometric discrepancy: 0.1143

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7Q08|1|A|A|885
7Q08|1|A|G|886
7Q08|1|A|G|887
7Q08|1|A|U|888
7Q08|1|A|G|889
7Q08|1|A|A|890
7Q08|1|A|A|891
7Q08|1|A|A|892
7Q08|1|A|U|893
7Q08|1|A|U|894

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal 40S subunit protein S14B

Chain b

40S ribosomal protein S26