HL_7Q08_107

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q08_107 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3246

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7Q08|1|A|C|1344
7Q08|1|A|A|1345
7Q08|1|A|U|1346
7Q08|1|A|U|1347
7Q08|1|A|U|1348
7Q08|1|A|G|1349

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal 40S subunit protein S5

Chain R

Ribosomal 40S subunit protein S16A

Chain U

Ribosomal 40S subunit protein S19A