HL_7Q0F_086

3D structure

PDB id

7Q0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with phyllanthoside

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7Q0F|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q0F_086 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.0902

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7Q0F|1|A|G|328
7Q0F|1|A|A|329
7Q0F|1|A|U|330
7Q0F|1|A|A|331
7Q0F|1|A|G|332
7Q0F|1|A|U|333
7Q0F|1|A|G|334
7Q0F|1|A|G|335
7Q0F|1|A|C|336

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain M

Ribosomal 40S subunit protein S11A