HL_7Q4K_043

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7Q4K|1|BA|G|386, 7Q4K|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_043 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0984

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7Q4K|1|BA|A|382
7Q4K|1|BA|C|383
7Q4K|1|BA|A|384
7Q4K|1|BA|C|385
7Q4K|1|BA|G|386
7Q4K|1|BA|U|387
7Q4K|1|BA|G|388
7Q4K|1|BA|G|389
7Q4K|1|BA|U|390
7Q4K|1|BA|A|391
7Q4K|1|BA|U|392

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L28

Chain D3

Transfer RNA; tRNA