HL_7Q4K_104
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACU(4AC)AU(T6A)A(PSU)G
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC, T6A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7Q4K_104 not in the Motif Atlas
- Homologous match to HL_6GSK_218
- Geometric discrepancy: 0.4198
- The information below is about HL_6GSK_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7Q4K|1|D2|C|30
7Q4K|1|D2|A|31
7Q4K|1|D2|C|32
7Q4K|1|D2|U|33
7Q4K|1|D2|4AC|34
7Q4K|1|D2|A|35
7Q4K|1|D2|U|36
7Q4K|1|D2|T6A|37
7Q4K|1|D2|A|38
7Q4K|1|D2|PSU|39
7Q4K|1|D2|G|40
Current chains
- Chain D2
- Met-tRNA (P site)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain D3
- Transfer RNA; tRNA
- Chain D4
- MsrDL mRNA
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