HL_7QCA_002

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGCAG

Length

6 nucleotides

Bulged bases

7QCA|1|L50|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_002 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.317

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|C|72
7QCA|1|L50|A|73
7QCA|1|L50|G|74
7QCA|1|L50|C|75
7QCA|1|L50|A|76
7QCA|1|L50|G|77

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LHH

Ribosomal L29 protein

Chain LLL

60S ribosomal protein L39

Chain LY0

60S ribosomal protein L26