HL_7QCA_010

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGAUAGUC

Length

9 nucleotides

Bulged bases

7QCA|1|L50|G|284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_010 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1438

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7QCA|1|L50|G|282
7QCA|1|L50|U|283
7QCA|1|L50|G|284
7QCA|1|L50|A|285
7QCA|1|L50|U|286
7QCA|1|L50|A|287
7QCA|1|L50|G|288
7QCA|1|L50|U|289
7QCA|1|L50|C|290

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LY0

60S ribosomal protein L26