HL_7QCA_011

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUCGGUAAUG

Length

10 nucleotides

Bulged bases

7QCA|1|L50|U|331, 7QCA|1|L50|A|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_011 not in the Motif Atlas

Homologous match to HL_8P9A_120

Geometric discrepancy: 0.2917

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7QCA|1|L50|C|326
7QCA|1|L50|U|327
7QCA|1|L50|C|328
7QCA|1|L50|G|329
7QCA|1|L50|G|330
7QCA|1|L50|U|331
7QCA|1|L50|A|332
7QCA|1|L50|A|333
7QCA|1|L50|U|334
7QCA|1|L50|G|335

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LL0

60S ribosomal protein L13

Chain LN0

Ribosomal protein L15

Chain LOO

60S ribosomal protein L44