HL_7QCA_014

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAUGGAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_014 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1961

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QCA|1|L50|A|443
7QCA|1|L50|A|444
7QCA|1|L50|U|445
7QCA|1|L50|G|446
7QCA|1|L50|G|447
7QCA|1|L50|A|448
7QCA|1|L50|U|449

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LEE

60S ribosomal protein L32

Chain LFF

60S ribosomal protein L35a

Chain LO0

Ribosomal protein L13A