HL_7QCA_015

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7QCA|1|L50|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_015 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1065

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QCA|1|L50|U|458
7QCA|1|L50|C|459
7QCA|1|L50|U|460
7QCA|1|L50|U|461
7QCA|1|L50|G|462
7QCA|1|L50|A|463
7QCA|1|L50|A|464
7QCA|1|L50|A|465
7QCA|1|L50|C|466
7QCA|1|L50|A|467

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LB0

60S ribosomal protein L3

Chain LEE

60S ribosomal protein L32