HL_7QCA_020

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7QCA|1|L50|A|664, 7QCA|1|L50|G|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_020 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.116

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|661
7QCA|1|L50|C|662
7QCA|1|L50|G|663
7QCA|1|L50|A|664
7QCA|1|L50|A|665
7QCA|1|L50|A|666
7QCA|1|L50|G|667
7QCA|1|L50|A|668
7QCA|1|L50|C|669

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LJJ

eL37 LJJ

Chain LN0

Ribosomal protein L15