HL_7QCA_025

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UAAAA

Length

5 nucleotides

Bulged bases

7QCA|1|L50|A|913

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_025 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.328

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7QCA|1|L50|U|911
7QCA|1|L50|A|912
7QCA|1|L50|A|913
7QCA|1|L50|A|979
7QCA|1|L50|A|980

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LH0

60S ribosomal protein L9

Chain LS0

60S ribosomal protein L20